Ham and Cheese Egg Muffins

Category: Morning Meals Worth Getting Out of Bed For

Ham and Cheese Egg Muffins bring together fluffy eggs, savory ham, cheddar cheese, and green onions for a delicious start to your morning. Baked in a muffin tin, these portable bites are simple to prepare—just whisk eggs with milk and seasonings, fold in diced ham and cheese, and bake until set. They're freezer-friendly and make for easy grab-and-go breakfasts during the week. Tuck leftovers in the fridge for a protein-packed snack or heat and enjoy on busy mornings. Balanced flavors and satisfying texture make them a family favorite that keeps mornings effortless yet tasty.

Clare Recipes
Created By Lily Chen
Updated on Sun, 01 Jun 2025 00:24:21 GMT
A plate of ham and cheese egg muffins. Save
A plate of ham and cheese egg muffins. | lilicooks.com

These Ham and Cheese Egg Muffins are a favorite busy morning breakfast that you can make ahead and grab on your way out the door. Filled with savory ham creamy cheddar and fresh green onion these little muffins are just right whether you are feeding hungry kids before school or need a high protein snack for work. They freeze beautifully and use simple ingredients you probably have in your kitchen right now.

I whipped up a batch before a road trip last summer and ever since my family requests them for brunch and meal prep. They are just that easy and satisfying.

Ingredients

  • Large eggs: provide structure and plenty of protein Try to use fresh eggs for the best texture
  • Milk: helps keep the muffins light and fluffy Whole or skim milk work but I like skim for a lighter muffin
  • Salt: is necessary for bringing out all the flavors A fine sea salt is my pick for even seasoning
  • Black pepper: gives a little warmth and depth to the muffins Grind fresh if you can for the best flavor
  • Garlic powder: adds subtle savory notes Choose a good quality powder for the best taste
  • Shredded cheddar cheese: adds creaminess and flavor Use sharp cheddar if you like a little more punch and shred it yourself for better melting
  • Ham steak: provides a hearty meaty bite Go for a thick ham steak with minimal gristle and cut it in even cubes
  • Green onions: add a fresh slight sharpness Thin green celery or chives work well in a pinch

Step-by-Step Instructions

Prep the Muffin Tin:
Generously spray a muffin tin with nonstick cooking spray making sure to get all the surfaces so the muffins will not stick A silicone muffin tin is my go-to since egg muffins release so easily from it
Mix the Wet Ingredients:
Crack the eggs into a big mixing bowl Add the milk salt black pepper and garlic powder Whisk very well until completely combined and the mixture looks light yellow with no streaks
Add the Fillings:
Stir in most of the shredded cheddar cheese reserving some for topping Add in the cubed ham and sliced green onions Mix gently so everything is evenly distributed
Fill and Top the Muffin Cups:
Spoon the egg mixture evenly into each well of your muffin tin Fill them about three quarters full Sprinkle the tops with the reserved cheddar cheese for a golden cheesy finish
Bake Until Set:
Place the tin into your preheated oven and bake for about twenty five to thirty minutes The muffins are done when they pull away from the edges of the tin and the centers are set and puffed up Let them cool in the pan for five minutes to make removal easier
A stack of ham and cheese egg muffins. Save
A stack of ham and cheese egg muffins. | lilicooks.com

Cheddar cheese is the heart of this recipe Every time I open the oven and smell that golden melty top it reminds me of Saturday mornings when my kids would sneak into the kitchen hoping to steal some before brunch was ready My youngest always insists on helping sprinkle the cheese just right

Storage Tips

Ham and Cheese Egg Muffins stay good in the fridge for up to four days Store them in an airtight container and reheat in the microwave for a quick breakfast They freeze very well Just let them cool completely then wrap each one in foil or plastic and freeze To reheat microwave from frozen or thaw in the fridge overnight before warming

Ingredient Substitutions

You can swap the cheddar for Swiss or Monterey Jack cheese If you are out of green onions try chives or even a tablespoon of finely diced red onion For a lighter version use lean turkey instead of ham or add diced bell peppers for extra veggies

Three ham and cheese egg muffins stacked on top of each other. Save
Three ham and cheese egg muffins stacked on top of each other. | lilicooks.com

Serving Suggestions

Serve these egg muffins with fresh fruit or toast for a portable balanced breakfast They also make a fun addition to a lunchbox or brunch spread You can top them with salsa or a dollop of Greek yogurt for a little extra flavor

Recipe FAQs

→ Can I use different types of cheese?

Absolutely! While cheddar offers a classic flavor, you can substitute with Swiss, Monterey Jack, or any preferred cheese for a unique twist.

→ How long can I store them?

Keep muffins refrigerated for up to four days. For longer storage, freeze them individually and reheat as needed.

→ Do I have to use ham?

No—feel free to try cooked bacon, turkey, sausage, or keep it vegetarian by adding extra veggies like spinach or peppers.

→ What’s the best way to reheat?

Warm in the microwave for 20-30 seconds or bake gently in a low oven until heated through. This keeps the texture tender.

→ Can I make these ahead of time?

Yes, prepare a batch in advance and refrigerate or freeze. They hold up well, saving time on busy mornings.

Ham and Cheese Egg Muffins

Savory eggs, ham, and cheese baked in muffin tins. Perfect for quick breakfasts or snacks any day.

Preparation Time
10 min
Cooking Time
25 min
Overall Time
35 min
Created By: Lily Chen

Category: Breakfast & Brunch

Skill Level: Beginner-Friendly

Cuisine Type: American

Output: 12 Serves (12 egg muffins)

Dietary Options: Low-Carb, Gluten-Free

Ingredients

01 12 large eggs
02 1/2 cup skim milk
03 1/2 teaspoon salt
04 1/4 teaspoon black pepper
05 1/4 teaspoon garlic powder
06 3/4 cup shredded cheddar cheese, divided
07 8 ounces ham steak, cubed
08 2 green onions, sliced thin

Steps

Step 01

Preheat your oven to 350 degrees Fahrenheit. Spray a muffin tin heavily with cooking spray. For best results, use a silicone muffin tin. Set aside.

Step 02

In a large bowl, whisk together the eggs, skim milk, salt, black pepper, and garlic powder.

Step 03

Stir in 1/2 cup of the shredded cheddar cheese, cubed ham, and sliced green onions.

Step 04

Fill the muffin tins with the egg mixture. Top each with the remaining 1/4 cup of shredded cheddar cheese.

Step 05

Bake for 25 to 30 minutes, or until the eggs pull away from the sides of the muffin tin and are set in the middle.

Step 06

Store leftovers in the refrigerator for up to four days. Refer to recommended methods for freezing and reheating.

Tips

  1. Using a silicone muffin tin helps prevent sticking and allows for easier removal of the egg muffins.

Required Tools

  • Muffin tin
  • Mixing bowl
  • Whisk
  • Cooking spray

Allergy Information

Always check each ingredient for allergens, and consult a medical professional if unsure.
  • Eggs
  • Dairy

Nutritional Information (per serving)

These details are shared for general guidance and don’t replace professional advice.
  • Calories: 120
  • Fats: 7 g
  • Carbohydrates: 2.6 g
  • Proteins: 11.3 g